Source code for tmtk.params.ClinicalParams

import tmtk
from .base import ParamsBase

[docs]class ClinicalParams(ParamsBase): docslink = "" @property def mandatory(self): return { 'COLUMN_MAP_FILE': { 'mandatory': True, 'helptext': 'Points to the column file.' } } @property def optional(self): params_ = { "WORD_MAP_FILE": { 'helptext': 'Points to the file with dictionary to be used.' }, "XTRIAL_FILE": { 'helptext': 'Points to the cross study concepts file.' }, "TAGS_FILE": { 'helptext': 'Points to the concepts tags file.' } } if not tmtk.options.transmart_batch_mode: params_.update({ "ONTOLOGY_MAP_FILE": { 'helptext': 'Points to the ontology mapping for this study.' }, "MODIFIERS_FILE": { 'helptext': 'Points to the modifiers file for this study.' }, "TRIAL_VISITS_FILE": { 'helptext': 'Points to the trial visits file for this study.' } }) return params_