API Description

Study class


Params classes

Params Container

Base class: ParamsBase

AnnotationParams

ClinicalParams

HighDimParams

StudyParams

TagsParams


Clinical classes

Clinical Container

ColumnMapping

DataFile

Variable

WordMapping

Annotations

Annotations Container

Base class: AnnotationBase

ChromosomalRegions

MicroarrayAnnotation

MirnaAnnotation

ProteomicsAnnotation

High Dimensional data

HighDim

HighDimBase

CopyNumberVariation

Expression

Mirna

Proteomics

ReadCounts

SampleMapping

Metadata Tags

Tags

Utilities

FileBase

Generic module

utils.CPrint module

utils.Exceptions module

utils.HighDimUtils module

utils.mappings module

Toolbox package

Generate chromosomal regions file

Remap chromosomal regions data

Study Wizard

Create study from templates

The Arborist

tmtk.arborist.common module

tmtk.arborist.connect_to_baas module

tmtk.arborist.jstreecontrol module