All modules for which code is available

• tmtk.annotation.AnnotationBase
• tmtk.annotation.Annotations
• tmtk.annotation.ChromosomalRegions
• tmtk.annotation.MicroarrayAnnotation
• tmtk.annotation.MirnaAnnotation
• tmtk.annotation.ProteomicsAnnotation
• tmtk.arborist.common
• tmtk.arborist.connect_to_baas
• tmtk.arborist.jstreecontrol
• tmtk.clinical.Clinical
• tmtk.clinical.ColumnMapping
• tmtk.clinical.DataFile
• tmtk.clinical.Variable
• tmtk.clinical.WordMapping
• tmtk.highdim.CopyNumberVariation
• tmtk.highdim.Expression
• tmtk.highdim.HighDim
• tmtk.highdim.HighDimBase
• tmtk.highdim.Mirna
• tmtk.highdim.Proteomics
• tmtk.highdim.ReadCounts
• tmtk.highdim.SampleMapping
• tmtk.params.AnnotationParams
• tmtk.params.ClinicalParams
• tmtk.params.HighDimParams
• tmtk.params.Params
• tmtk.params.StudyParams
• tmtk.params.TagsParams
• tmtk.study
• tmtk.tags.Tags
• tmtk.toolbox.generate_chromosomal_regions_file
• tmtk.toolbox.remap_chromosomal_regions
• tmtk.toolbox.template_reader_deprecated.interpret_templates
• tmtk.toolbox.wizard
• tmtk.utils.Exceptions
• tmtk.utils.Generic
• tmtk.utils.filebase
• tmtk.utils.mappings