Source code for tmtk.params.StudyParams

from .base import ParamsBase

import os
import json


[docs]class StudyParams(ParamsBase): docslink = "https://github.com/thehyve/transmart-batch/blob/master/docs/study-params.md" def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) self.json_blob = None @property def mandatory(self): return { 'STUDY_ID': { 'default': ('Uppercased parent directory name of the params' ' file is default.'), 'helptext': 'Identifier of the study.', } } @property def optional(self): return { "TOP_NODE": { 'default': '\(Public|Private) Studies\<STUDY_ID>', 'helptext': 'The study top node.' }, "SECURITY_REQUIRED": { 'possible_values': ['Y', 'N'], 'default': 'Y', 'helptext': 'Defines study as Private (Y) or Public (N).' }, "STUDY_JSON_BLOB": { 'helptext': 'Points to JSON file that will be loaded as study blob.' } }
[docs] def write_to(self, path, *args, **kwargs): super().write_to(path, *args, **kwargs) blob_param = self.get('STUDY_JSON_BLOB') if self.json_blob and blob_param: with open(os.path.join(os.path.dirname(path), blob_param), 'w') as f: json.dump(self.json_blob, f)