from .HighDimBase import HighDimBase
[docs]class ReadCounts(HighDimBase):
"""
Subclass for ReadCounts.
"""
def _validate_specifics(self, messages):
"""
Makes checks to determine whether transmart-batch likes this file.
Checks header if it contains only <samplecode>.(normalized)readcount.
Also
"""
self._check_header_extensions(messages)
[docs] def remap_to(self, destination=None):
"""
:param destination:
:return:
"""
return self._remap_to_chromosomal_regions(destination)
@property
def samples(self):
return [h.rsplit('.', 1)[0] for h in self.header[1:]]
@property
def allowed_header(self):
return ['readcount',
'normalizedreadcount']